| Remarks |
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8:30 AM |
Welcome |
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| Keynote/Invited Talk |
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8:45 AM |
Keynote: Applications of deep learning to critical obstacles understanding and treating neurodegenerative disease |
Steve Finkbeiner (UCSF) |
| Keynote/Invited Talk |
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9:45AM |
Invited Talk: Mapping the brain at cellular resolution: academic and pharmaceutical industry applications |
Pavel Olsen (Cold Spring Habor Laboratory) |
| Break |
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10:15 AM |
Morning Break |
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| Session Header |
Spotlight Presentations of Accepte Papers 1 (10:30-11:30 AM) |
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| Oral Paper |
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10:30 AM |
Cell Image Segmentation by Integrating Multiple CNNs |
Kazuhiro Hotta; Kenta Terai; Ayako Imanishi; Michiyuki Matsuda; Yuki Hiramatsu |
| Oral Paper |
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10:40 AM |
Large Kernel Refine Fusion Net for Neuron Membrane Segmentation |
Dongnan Liu, Donghao Zhang, Yang Song, Chaoyi Zhang, Heng Huang, Mei Chen, Weidong Cai |
| Oral Paper |
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10:50 AM |
Three Dimensional Fluorescence Microscopy Image Synthesis and Segmentation |
David J Ho; Chichen Fu; Edward Delp*; Kenneth Dunn; Paul Salama; Soonam Lee; Shuo Ha |
| Oral Paper |
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11:00 AM |
Improved Extraction of Objects from Urine Microscopy Images with Unsupervised Thresholding and Supervised U-net Techniques |
Tathagato Rai Dastidar; Bharath Cheluvaraju; Abdul Aziz; Harshit Pande* |
| Oral Paper |
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11:10 AM |
Multilayer Encoder-Decoder Network for 3D Nuclear Segmentation in Spheroid Models of Human Mammary Epithelial Cell Lines |
Bahram Parvin; Garrett Winkelmaier; Mina Khoshdeli |
| Oral Paper |
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11:20 AM |
Resolution-Enhanced Lensless Color Shadow Imaging Microscopy Based on Large Field-of-View Submicron-Pixels Imaging Sensor |
Limin Zhang; Cheng Yang*; Tao Yue; Feng Yan; Haowen Ma; Xia Hua; Xu Cao; Xiaofeng Bu |
| Panel |
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11:30 AM |
Industry/Government Panel on Research Priority & Funding Opportunities |
Matthew Andrew (Zeiss), Peter Bajcsy (NIST), Lawrence W.C. Chan(PolyU), Michelle Freund (NIH), Daniel Hoepper (Astellas), Jie Yang (NSF), Yi Zhu (Bainuo) |
| Break |
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12:30 PM |
Lunch |
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| Keynote/Invited Talk |
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13:30 PM |
Invited Talk: Assessment of intra-tumor heterogeneity and evolutionary trajectories in cancer |
Subhajyoti De (Rutgers University) |
| Keynote/Invited Talk |
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14:00 PM |
Invited Talk: Image Analysis Methods for Measuring the Micro-Environment of Single Cells Within Three-Dimensional Multicellular Spheroids: Optimization for Breakthroughs in Drug Discovery |
Ty Voss (Voss Imaging Informatics (LLC)) |
| Session Header |
Spotlight Presentations of Accepted Papers 2 (14:30-15:30 PM) |
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| Oral Paper |
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14:30 PM |
Sequential Modeling of Deep Features for Breast Cancer Histopathological Image Classification |
Arnav Bhavsar; vibha gupta |
| Oral Paper |
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14:40 PM |
Comparison of deep transfer learning strategies for digital pathology |
Pierre Geurts; Raphaël Marée; Romain Mormont* |
| Oral Paper |
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14:50 PM |
3d Cell Nuclear Morphology: Microscopy Imaging Dataset and Voxel-Based Morphometry Classification Results |
Alexandr A. Kalinin*; Ari Allyn-Feuer; Walter Meixner; Gordon Victor-Fon; Alex Ade; Amy Creekmore; Gen Zheng; David Dilworth; James Verdone; Ivo Dinov; Robert W. Veltri; Kenneth J. Pienta; Gerald A. Higgins; Jeffrey R. de Wet; Donald S. Coffey; John W. Wiley; Brian D. Athey |
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| Oral Paper |
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15:00 PM |
FastSME: faster and smoother manifold extraction from 3D stack |
Rasmus R. Paulsen; ASM Shihavuddin*; Nathalie Spassky; Auguste Genovesio; Elton rexhepaj; Sreetama Basu |
| Oral Paper |
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15:10 PM |
Localization and Tracking in 4D Fluorescence Microscopy Imagery |
Roy Shilkrot; Shahira Abousamra*; Natalie Dr. Elia; Shai Ms. Adar |
| Oral Paper |
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15:20 PM |
Estimation of sperm concentration an total motility from microscopic video of human semen samples |
Karan Dewan; Maroof Ahmad; Tathagato Rai Dastidar* |
| Break & Posters |
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15:30 PM |
Afternoon Break & Poster Session for Accepted Papers and Work-in-Progress Posters (15:30-16:30 PM) |
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| Poster Presentation |
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Impact of Sampling and Augmentation on Generalization Accuracy of Microscopy Image Segmentation Methods |
Joe Chalfoun; Mary Brady; Michael Majurski; Peter Bajcsy*; Petru Manesc |
| Poster Presentation |
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Cellular Structure Segmentation in 3D Microscopy Images |
Susanne Rafelski; Liya Ding; Jianxu Chen |
| Poster Presentation |
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Understanding Pixel-to-Label Prediction Model |
Petru Manescu; Nathan Hotaling; Carl Simon; Sarala Padi; Peter Bajcsy*; Nicholas Schaub |
| Keynote/Invited Talk |
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16:30 PM |
Invited Talk: Life and death decisions- classification, characterization and predictions of death in neuronal models of neurodegenerative disease |
Jeremy Linsley (UCSF) |
| Keynote/Invited Talk |
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17:00 PM |
Invite Talk. Efficient and Scalable Tools for Large Scale Microscopy Image Analysis |
Erhan Bas (Janelia Research Campus, HHMI) |
| Remarks |
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17:30 PM |
Awards Ceremony and Closing Remarks |
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